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Title

Authors

2009

Collection

Reference

On high b diffusion imaging in the human brain: ruminations and experimental insights

Mulkern R.V., Haker S.J., Maier S.E.

Oct-2009

NCIGT

Magn Reson Imaging. 2009 Oct;27(8):1151-62.

MRI signal intensity based B-Spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy

Oguro S., Tokuda J., Elhawary H., Haker S., Kikinis R., Tempany C.M.C., Hata N.

Oct-2009

SNR, NA-MIC, NAC, NCIGT, Prostate Group, SLICER

J Magn Reson Imaging. 2009 Oct 23;30(5):1052-105.

Carr-Purcell-Meiboom-Gill imaging of prostate cancer: quantitative T2 values for cancer discrimination

Roebuck J.R., Haker S.J., Mitsouras D., Rybicki F.J., Tempany C.M., Mulkern R.V.

May-2009

Prostate Group, NCIGT

Magn Reson Imaging. 2009 May;27(4):497-502.

Prostate contouring in MRI guided biopsy

Vikal S., Haker S., Tempany C.M., Fichtinger G.

Feb-2009

NA-MIC, Prostate Group

Proceedings of SPIE Medical Imaging, Image Processing 2009; 7259.

MR-guided prostate interventions with 3D Slicer and the NA-MIC Kit

Pace D., Oguro S., Haker S., Hata N.

Jan-2009

NA-MIC, Download Data, NCIGT, Prostate Group, SLICER, SNR

NCIGT-SNR Tutorial. 2009 January;

Title

Authors

2008

Collection

Reference

Multimodal Registration of White Matter Brain Data via Optimal Mass Transport

Rehman T.u., Haber E., Pohl K.M., Haker S., Halle M., Talos F., Wald L.L., Kikinis R., Tannenbaum A.

Sep-2008

NAC, NA-MIC

Proceedings of the Third Workshop on Computational Biomechanics for Medicine (CBM'08), Int Conf Med Image Comput Comput Assist Interv. 2008; 27-36.

MR-Guided Prostate Interventions

Tempany C.M., Straus S., Hata N., Haker S.

Feb-2008

Prostate Group, NA-MIC, NCIGT, SLICER, SNR

J Magn Reson Imaging, 2008 Feb;27(2):356-67.

Title

Authors

2007

Collection

Reference

Geodesic-Loxodromes for Diffusion Tensor Interpolation and Difference Measurement

Kindlmann G., San José Estepar R., Niethammer M., Haker S., Westin C.

Oct-2007

LMI, NAC, NCIGT, SPL

Int Conf Med Image Comput Comput Assist Interv. 2007;10(Pt 1):1-9.

Transperineal prostate biopsy under magnetic resonance image guidance: A needle placement accuracy study

Blumenfeld P., Hata N., Dimaio S.P., Zou K.H., Haker S., Fichtinger G., Tempany C.M.

Sep-2007

NCIGT, Prostate Group, SNR

J Magn Reson Imaging. 2007 Sep;26(3):688-94.

Role of endorectal coil magnetic resonance imaging in treatment of patients with prostate cancer and in determining radical prostatectomy surgical margin status: report of a single surgeon's practice

Zhang J.Q., Loughlin K.R., Zou K.H., Haker S., Tempany C.M.

Jun-2007

NCIGT, Prostate Group

Urology. 2007 Jun;69(6):1134-7.

An image morphing technique based on optimal mass preserving mapping

Zhu L., Yang Y., Haker S., Tannenbaum A.

Jun-2007

SPL, NAC

IEEE Trans Image Process. 2007 Jun;16(6):1481-95.

Title

Authors

2006

Collection

Reference

Shape-Driven 3D Segmentation Using Spherical Wavelets

Nain D., Haker S., Bobick A., Tannenbaum A.

Oct-2006

NA-MIC, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):66-74.

Deformable structure registration of bladder through surface mapping

Xiong L., Viswanathan A., Stewart A.J., Haker S., Tempany C.M., Chin L.M., Cormack R.A.

Jun-2006

SPL, Prostate Group

Med Phys. 2006 Jun;33(6):1848-56.

Fast Regularized Reconstruction of Non-uniformly Subsampled Parallel MRI data.

Hoge W.S., Kilmer M.E., Haker S.J., Brooks D.H., Kyriakos W.E.

Apr-2006

NCIGT, MIPG

Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 3:714-717.

Title

Authors

2005

Collection

Reference

Magnetic resonance spectroscopy-guided transperineal prostate biopsy and brachytherapy for recurrent prostate cancer

Barnes A.S., Haker S.J., Mulkern R.V., So M., D'Amico A.V., Tempany C.M.

Dec-2005

SPL, Prostate Group

Urology. 2005 Dec;66(6):1319.e13-15.

Mass Preserving Registration for Heart MR Images

Zhu L., Haker S., Tannenbaum A.

Oct-2005

NA-MIC, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 2):147-54.

Magnetic resonance-guided prostate interventions

Haker S., Mulkern R.V., Roebuck J.R., Barnes A.S., Dimaio S.P., Hata N., Tempany C.M.

Oct-2005

Prostate Group, NCIGT, SLICER, SNR

Top Magn Reson Imaging. 2005 Oct;16(5):355-68.

A global goodness-of-fit test for receiver operating characteristic curve analysis via the bootstrap method

Zou K.H., Resnic F.S., Talos I., Goldberg-Zimring D., Bhagwat J.G., Haker S.J., Kikinis R., Jolesz F.A., Ohno-Machado L.

Oct-2005

SPL, NAC, NCIGT

J Biomed Inform. 2005 Oct;38(5):395-403.

Automated atlas-based clustering of white matter fiber tracts from DTMRI

Maddah M., Mewes A.U.J., Haker S., Grimson W.E.L., Warfield S.K.

Oct-2005

SPL, CRL, NA-MIC, NAC

Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):188-95.

Combining classifiers using their receiver operating characteristics and maximum likelihood estimation

Haker S., Wells W.M., Warfield S.K., Talos I., Bhagwat J.G., Goldberg-Zimring D., Mian A., Ohno-Machado L., Zou K.H.

Oct-2005

SPL, CRL, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):506-14.

Harmonic skeleton guided evaluation of stenoses in human coronary arteries

Yang Y., Zhu L., Haker S., Tannenbaum A.R., Giddens D.P.

Oct-2005

SPL, NA-MIC, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):490-7.

Multiscale 3D shape analysis using spherical wavelets

Nain D., Haker S., Bobick A., Tannenbaum A.R.

Oct-2005

SPL, NA-MIC, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 2):459-67.

Capturing intraoperative deformations: research experience at Brigham and Women's Hospital

Warfield S.K., Haker S.J., Talos I., Kemper C.A., Weisenfeld N., Mewes A.U.J., Goldberg-Zimring D., Zou K.H., Westin C., Wells W.M., Tempany C.M., Golby A., Black P.M., Jolesz F.A., Kikinis R.

Apr-2005

SPL, CRL, LMI, NAC, NCIGT

Med Image Anal. 2005 Apr;9(2):145-62.

Statistical Validation of Brain Tumor Shape Approximation via Spherical Harmonics for Image-Guided Neurosurgery

Goldberg-Zimring D., Talos I., Bhagwat J.G., Haker S.J., Black P.M., Zou K.H.

Apr-2005

SPL, NCIGT, SLICER

Acad Radiol. 2005 Apr;12(4):459-66.

Flattening maps for the visualization of multibranched vessels

Zhu L., Haker S., Tannenbaum A.

Feb-2005

SPL, NA-MIC

IEEE Trans Med Imaging. 2005 Feb;24(2):191-198.

Title

Authors

2004

Collection

Reference

Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance.

Haker S., Warfield S.K., Tempany C.M.

Sep-2004

CRL, NAC, NCIGT

Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 2):267-275.

Improved Non-rigid Registration of Prostate MRI

du Bois d'Aische A., De Craene M., Haker S., Weisenfeld N., Tempany C.M., Macq B., Warﬁeld S.K.

Sep-2004

SPL, CRL, NAC, NCIGT, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 1):845-852.

The tale of Phineas Gage, digitally remastered

Ratiu P., Talos I., Haker S., Lieberman D., Everett P.

May-2004

SPL, NAC, SLICER

J Neurotrauma. 2004 May;21(5):637-43.

Statistical Validation of Image Segmentation Quality Based on a Spatial Overlap Index: Scientific Reports

Zou K.H., Warfield S.K., Bharatha A., Tempany C.M., Kaus M.R., Haker S.J., Wells W.M., Jolesz F.A., Kikinis R.

Feb-2004

CRL, NAC, NCIGT

Acad Radiol. 2004 Feb;11(2):178-89.

Workflow modeling and analysis of computer guided prostate brachytherapy under MR imaging control

Dickhaus C.F., Burghart C., Tempany C.M., D'Amico A., Haker S., Kikinis R., Woern H.

Jan-2004

SPL, NCIGT

Stud Health Technol Inform. 2004;98:72-4.

Title

Authors

2003

Collection

Reference

Detection of prostate cancer by integration of line-scan diffusion, T2-mapping and T2-weighted magnetic resonance imaging; a multichannel statistical classifier

Chan I., Wells W., Mulkern R.V., Haker S., Zhang J., Zou K.H., Maier S.E., Tempany C.M.

Sep-2003

SPL, NCIGT

Med Phys. 2003 Sep;30(9):2390-8.

A unified variational approach to denoising and bias correction in MR

Fan A., Wells III W.M., Fisher J.W., Cetin M., Haker S., Mulkern R., Tempany C.M., Willsky A.S.

Jul-2003

SPL, NAC, NCIGT

Inf Process Med Imaging. 2003;18:148-59.

Title

Authors

2002

Collection

Reference

Intra-Patient Prone to Supine Colon Registration for Synchronized Virtual Colonoscopy

Nain D., Haker S., Grimson W.E.L., Cosman Jr E., Wells W.W., Ji H., Kikinis R., Westin C.

Sep-2002

SPL, LMI

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 2):573-580.

New Approaches to Estimation of White Matter Connectivity in Diffusion Tensor MRI: Elliptic PDEs and Geodesics in a Tensor-Warped Space

O'Donnell L., Haker S., Westin C.

Sep-2002

LMI, NAC, SLICER

Int Conf Med Image Comput Comput Assist Interv. 2002;5(Pt 1):459-466.

Advanced Nonrigid Registration Algorithms for Image Fusion

Warfield S.K., Guimond A., Roche A., Bharatha A., Tei A., Talos F., Rexilius J., Ruiz-Alzola J., Westin C., Haker S., Angenent S., Tannenbaum A., Jolesz F.A., Kikinis R.

Jun-2002

SPL, NAC, LMI, NCIGT, CRL

In: Brain Mapping: The Methods. Ed. Arthur W. Toga and John C. Mazziotta. San Diego, USA: Academic Press. 2002; Ch.24:661-690.

Title

Authors

2001

Collection

Reference

An Interactive Virtual Endoscopy Tool

Nain D., Haker S., Kikinis R., Grimson W.E.L.

Oct-2001

SPL, SLICER, NAC

Satellite Workshop Int Conf Med Image Comput Comput Assist Interv. 2001;4.

Mass Preserving Mappings and Image Registration

Haker S., Tannenbaum A., Kikinis R.

Oct-2001

SPL, NAC

Int Conf Med Image Comput Comput Assist Interv. 2001;4:120-127.

Title

Authors

2000

Collection

Reference

Nondistorting Flattening for Virtual Colonoscopy

Haker S., Angenent S., Tannenbaum A., Kikinis R.

Oct-2000

SPL

Int Conf Med Image Comput Comput Assist Interv. 2000;3:358-366.

Nondistorting flattening maps and the 3-D visualization of colon CT images

Haker S., Angenent S., Tannenbaum A., Kikinis R.

Jul-2000

SPL

IEEE Trans Med Imaging. 2000 Jul;19(7):665-70.

Conformal Surface Parameterization for Texture Mapping

Haker S., Angenent S., Tannenbaum A., Kikinis R., Sapiro G., Halle M.

Apr-2000

SPL

IEEE Transaction on Visualization and Computer Graphics April-June 2000; 6(2):181-189.

Title

Authors

1999

Collection

Reference

Conformal Geometry and Brain Flattening

Angenent S., Haker S., Tannenbaum A., Kikinis R.

Sep-1999

SPL

Int Conf Med Image Comput Comput Assist Interv. 1999;2:271-278.

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Surgical Navigation and Robotics Laboratory

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